{
  "_id": "6a22e21d530b9bc726bc9cd0",
  "Package": "FluxSeparator",
  "Title": "Separation of Diffusive and Ebullitive Fluxes",
  "Version": "2.0.1",
  "Authors@R": "c(\nperson(\"Jonas Stage\", \"Sø\", , \"Jonassoe@biology.sdu.dk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3222-3706\")),\nperson(\"Kaj\", \"Sand-Jensen\", , \"ksandjensen@bio.ku.dk\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-2534-4638\")),\nperson(\"Theis\", \"Kragh\", , \"tkragh@biology.sdu.dk\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-9760-2571\"))\n)",
  "Description": "Separates diffusive and ebullitive (bubble) fluxes from\ncontinuous concentration measurements using a running variance\napproach. Ebullitive events are identified when the running\nvariance exceeds a user-set threshold. Diffusive fluxes are\ncalculated via linear regression on the non-ebullitive portion\nof the data. See Sø et al. (2024) <doi:10.1029/2024JG008035>\nfor details.",
  "License": "MIT + file LICENSE",
  "URL": "<link href=\"https://cran.r-project.org/web/packages/FluxSeparator\"\nrel = \"canonical\">, <link\nhref\"https://github.com/JonasStage/FluxSeparator\" rel =\n\"canonical\">",
  "BugReports": "https://github.com/JonasStage/FluxSeparator/issues",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "LazyData": "true",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://jonasstage.r-universe.dev",
  "Date/Publication": "2026-06-05 13:02:16 UTC",
  "RemoteUrl": "https://github.com/jonasstage/fluxseparator",
  "RemoteRef": "HEAD",
  "RemoteSha": "b43bd6915045e4ad496b406717846a480014f493",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-05 14:46:20 UTC",
    "User": "root"
  },
  "Author": "Jonas Stage Sø [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3222-3706>),\nKaj Sand-Jensen [ctb] (ORCID: <https://orcid.org/0000-0003-2534-4638>),\nTheis Kragh [ctb] (ORCID: <https://orcid.org/0000-0002-9760-2571>)",
  "Maintainer": "Jonas Stage Sø <Jonassoe@biology.sdu.dk>",
  "MD5sum": "0c71ace7e8ab2ad0941a46bdfd17def4",
  "_user": "jonasstage",
  "_type": "src",
  "_file": "FluxSeparator_2.0.1.tar.gz",
  "_fileid": "5bd54f0b939f74f56c60c58416ccc766fbe429d295ad3b01b16385e7669dd755",
  "_filesize": 262020,
  "_sha256": "5bd54f0b939f74f56c60c58416ccc766fbe429d295ad3b01b16385e7669dd755",
  "_created": "2026-06-05T14:46:20.000Z",
  "_published": "2026-06-05T14:50:05.213Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79751312454,
      "time": 183,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7439495076"
    },
    {
      "job": 79751312599,
      "time": 178,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439493665"
    },
    {
      "job": 79751312521,
      "time": 97,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7439475415"
    },
    {
      "job": 79751312528,
      "time": 112,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439496536"
    },
    {
      "job": 79750564693,
      "time": 237,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439426399"
    },
    {
      "job": 79751312726,
      "time": 141,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439479662"
    },
    {
      "job": 79751312664,
      "time": 189,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7439497402"
    },
    {
      "job": 79751312576,
      "time": 125,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7439473374"
    },
    {
      "job": 79751312633,
      "time": 119,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439471472"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jonasstage/fluxseparator",
  "_commit": {
    "id": "b43bd6915045e4ad496b406717846a480014f493",
    "author": "Jonas Stage Sø <jonassoe@biology.sdu.dk>",
    "committer": "Jonas Stage Sø <jonassoe@biology.sdu.dk>",
    "message": "Updated readme\n",
    "time": 1780664536
  },
  "_maintainer": {
    "name": "Jonas Stage Sø",
    "email": "jonassoe@biology.sdu.dk",
    "login": "jonasstage",
    "linkedin": "in/jonas-stage-sø-50b748381",
    "orcid": "0000-0002-3222-3706",
    "description": "",
    "uuid": 57667863
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "broom",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggpubr",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "HMR",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinydashboard",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "TTR",
      "role": "Imports"
    },
    {
      "package": "patchwork",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "jonasstage",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-47",
      "n": 2
    },
    {
      "week": "2026-23",
      "n": 14
    }
  ],
  "_tags": [
    {
      "name": "v2.0.0",
      "date": "2026-06-02"
    }
  ],
  "_stars": 6,
  "_contributors": [
    {
      "user": "jonasstage",
      "count": 69,
      "uuid": 57667863
    }
  ],
  "_userbio": {
    "uuid": 57667863,
    "type": "user",
    "name": "JonasSø"
  },
  "_downloads": {
    "count": 466,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FluxSeparator"
  },
  "_devurl": "https://github.com/jonasstage/fluxseparator",
  "_searchresults": 30,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FluxSeparator.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jonasstage/fluxseparator",
  "_realowner": "jonasstage",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2026-03-29"
    },
    {
      "version": "2.0.0",
      "date": "2026-06-02"
    }
  ],
  "_exports": [
    "%>%",
    "diffusive_flux",
    "ebullitive_flux",
    "FluxSeparatorApp",
    "ppm_to_umol",
    "read_CH4_files"
  ],
  "_datasets": [
    {
      "name": "DIY_sensor_data",
      "title": "Data from Lake Lyng",
      "object": "DIY_sensor_data",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "datetime",
        "RH",
        "tempC",
        "CH4smV",
        "K33_RH",
        "K33_Temp",
        "K33_CO2",
        "SampleNumber",
        "PumpCycle",
        "pred_CH4",
        "station",
        "sensor"
      ],
      "rows": 2400,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "FluxSeparator-package",
      "title": "FluxSeparator: Separation of Diffusive and Ebullitive Fluxes",
      "topics": [
        "FluxSeparator-package",
        "FluxSeparator"
      ]
    },
    {
      "page": "diffusive_flux",
      "title": "Diffusive flux",
      "topics": [
        "diffusive_flux"
      ]
    },
    {
      "page": "DIY_sensor_data",
      "title": "Data from Lake Lyng",
      "topics": [
        "DIY_sensor_data"
      ]
    },
    {
      "page": "ebullitive_flux",
      "title": "Ebullitive flux",
      "topics": [
        "ebullitive_flux"
      ]
    },
    {
      "page": "FluxSeparatorApp",
      "title": "FluxSeparator Shiny App",
      "topics": [
        "FluxSeparatorApp"
      ]
    },
    {
      "page": "ppm_to_umol",
      "title": "ppm_to_µmol",
      "topics": [
        "ppm_to_umol"
      ]
    },
    {
      "page": "read_CH4_files",
      "title": "read_CH4_files",
      "topics": [
        "read_CH4_files"
      ]
    }
  ],
  "_readme": "https://github.com/jonasstage/fluxseparator/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "base64enc",
    "bit",
    "bit64",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "car",
    "carData",
    "cli",
    "clipr",
    "colorspace",
    "commonmark",
    "corrplot",
    "cowplot",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "Deriv",
    "digest",
    "doBy",
    "dplyr",
    "DT",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "forecast",
    "Formula",
    "fracdiff",
    "fs",
    "generics",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "glue",
    "gridExtra",
    "gtable",
    "highr",
    "HMR",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "lme4",
    "lmtest",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "memoise",
    "mgcv",
    "microbenchmark",
    "mime",
    "minqa",
    "modelr",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "otel",
    "patchwork",
    "pbkrtest",
    "pillar",
    "pkgconfig",
    "polynom",
    "prettyunits",
    "progress",
    "promises",
    "purrr",
    "quantreg",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "readr",
    "reformulas",
    "rlang",
    "rmarkdown",
    "rstatix",
    "S7",
    "sass",
    "scales",
    "shiny",
    "shinydashboard",
    "sourcetools",
    "SparseM",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tinytex",
    "TTR",
    "tzdb",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "xfun",
    "xtable",
    "xts",
    "yaml",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "getting-started.Rmd",
      "filename": "getting-started.html",
      "title": "Getting Started with FluxSeparator",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Installation",
        "Loading example data",
        "Calculating ebullitive flux",
        "Key parameters",
        "Calculating diffusive flux",
        "Unit conversion",
        "Choosing the right runvar_cutoff",
        "Working with plots",
        "Citing FluxSeparator"
      ],
      "created": "2026-06-02 07:40:07",
      "modified": "2026-06-05 12:55:06",
      "commits": 2
    }
  ],
  "_score": 5.2552725051033065,
  "_indexed": true,
  "_nocasepkg": "fluxseparator",
  "_universes": [
    "jonasstage"
  ],
  "_previous": "2.0.0.9000",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-06-05T14:49:01.000Z",
      "distro": "noble",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "40825de873401059853b85e9dfdf448e881e0fc12814d53d3b6eb5f1a37faf1b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-06-05T14:48:57.000Z",
      "distro": "noble",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "1913eed9b285498197411318c0778d08666b9606690e899503682a7e70a15520",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-06-05T14:48:25.000Z",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "76f22d32734f7eaf7dfba1aeaebc127b656a11ac3e420fce2d2629377c8716dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-06-05T14:49:17.000Z",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "b4eff78ea63bc93c73e1bc44de360db38556e159ddcdc370149b0b311e8fd2ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.1",
      "date": "2026-06-05T14:49:01.000Z",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "7786f1ffdfdeac5a973ca481e37f1a959b6319a13f57ab6d62fbfc9721fbf6e6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-06-05T14:48:56.000Z",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "8d2fe033c9bf7be0f053a0e418f8e142ebf5ce523f0c185f9cd7a3ad01897acb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-06-05T14:47:46.000Z",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "412f45675a25c442c49ac5602129585a2ad3b057f799418154adbe4a1e87aa96",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-06-05T14:47:45.000Z",
      "commit": "b43bd6915045e4ad496b406717846a480014f493",
      "fileid": "e08e4592f4d6de0148ee648f81f45ba620252e287fb992ba00b12f7818df781f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonasstage/actions/runs/27021547379"
    }
  ]
}