Package: FluxSeparator 2.0.1

FluxSeparator: Separation of Diffusive and Ebullitive Fluxes

Separates diffusive and ebullitive (bubble) fluxes from continuous concentration measurements using a running variance approach. Ebullitive events are identified when the running variance exceeds a user-set threshold. Diffusive fluxes are calculated via linear regression on the non-ebullitive portion of the data. See Sø et al. (2024) <doi:10.1029/2024JG008035> for details.

Authors:Jonas Stage Sø [aut, cre], Kaj Sand-Jensen [ctb], Theis Kragh [ctb]

FluxSeparator_2.0.1.tar.gz
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FluxSeparator_2.0.1.tgz(r-4.6-any)FluxSeparator_2.0.1.tgz(r-4.5-any)
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FluxSeparator_2.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FluxSeparator/json (API)

# Install 'FluxSeparator' in R:

install.packages('FluxSeparator', repos = c('https://jonasstage.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonasstage/fluxseparator/issues

Datasets:

DIY_sensor_data - Data from Lake Lyng

On CRAN:

5.26 score 6 stars 30 scripts 466 downloads 6 exports 128 dependencies

Last updated from:b43bd69150. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	183
source / vignettes	OK	237
linux-release-x86_64	OK	178
macos-release-arm64	OK	112
macos-oldrel-arm64	OK	97
windows-devel	OK	189
windows-release	OK	119
windows-oldrel	OK	125
wasm-release	OK	141

Exports:%>%diffusive_flux ebullitive_flux FluxSeparatorApp ppm_to_umol read_CH4_files

Dependencies:abind backports base64enc bit bit64 boot broom bslib cachem car carData cli clipr colorspace commonmark corrplot cowplot cpp11 crayon crosstalk curl Deriv digest doBy dplyr DT evaluate farver fastmap fontawesome forecast Formula fracdiff fs generics ggplot2 ggpubr ggrepel ggsci ggsignif glue gridExtra gtable highr HMR hms htmltools htmlwidgets httpuv isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle lme4 lmtest lubridate magrittr MASS Matrix MatrixModels memoise mgcv microbenchmark mime minqa modelr nlme nloptr nnet numDeriv otel patchwork pbkrtest pillar pkgconfig polynom prettyunits progress promises purrr quantreg R6 rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack readr reformulas rlang rmarkdown rstatix S7 sass scales shiny shinydashboard sourcetools SparseM stringi stringr survival tibble tidyr tidyselect timechange timeDate tinytex TTR tzdb urca utf8 vctrs viridisLite vroom withr xfun xtable xts yaml zoo

Getting Started with FluxSeparator

Rendered fromgetting-started.Rmdusingknitr::rmarkdown

Last update: 2026-06-05
Started: 2026-06-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
FluxSeparator: Separation of Diffusive and Ebullitive Fluxes	FluxSeparator-package FluxSeparator
Diffusive flux	diffusive_flux
Data from Lake Lyng	DIY_sensor_data
Ebullitive flux	ebullitive_flux
FluxSeparator Shiny App	FluxSeparatorApp
ppm_to_µmol	ppm_to_umol
read_CH4_files	read_CH4_files